Introduction

Number of Progenics Required to Establish the Genotype of a Phenotype

Linkage Studies
Part I

Linkage Studies
Part II

Minimum Sample Sizes

Linkage Studies - Part I

Source of Data Amount of Information per individual(i)

Repulsion: testcross     1   
p(1-p)
   
F2   2(1+2+p2
(1-p2)(2+p2)

For coupling data we use the same formulas, but substitute 1- p for p.

I = 1/Vp = ni

Example A:

Let p = 0.4, evaluate the amount of information for testcross vs F data with repulsion linkage. Let n = 1000.

Testcross I = ni; i = 1/[p(1 - p)] = 1/(0.4 x 0.6) = 4.167

I = 1000(4.167) = 4167

The results show that 1455/4167 = 0.35 which means that in this example F2 repulsion data only provides 35% as much information as testcross data.

Copyright 2000©, Ted Helms

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