Estimation of Recombinant Faction

Product Method

Example I

Example II - Interpolation

Development Of The Product Method

Repulsion Linkage

Example III

Combined Estimates Using the Product Method

Example I

See Genetics 15: pg 95

Cross AABB x aabb F1 AaBb. Self-fertilize AaBb to develop F2 family. The following data was observed:

Genotype Designation Observed Relative Frequency
A_B_ r 1757
A_bb s 118
aaB_ t 119
aabb u 506
Total N 2500

This excess of A_B_ and aabb classes indicates that the loci are in coupling linkage. For coupling we use the ratio st/ru to use the table and find p. In this example:

We can use Table 2 (pg. 88) to find p by looking up under the coupling column between values 0.01419 and 0.01586. The crossover value is between 0.095 and 0.10.

We can then add 0.095 + 0.0048 = 0.0998 = p

We had to interpolate between 0.095 and 0.10 because st/ru = 0.01579 which was between 0.01419 and 0.01586. The associated standard error of p is also found from table 2.

The standard error is between 0.2097/(N)0.5 and 0.2153/(N)0.5.

160 x 0.0056 = 0.0053
167

0.0053 + 0.2097 = 0.2150/(N)0.5 is the standard error of p by interpolation.

Copyright 2000©, Ted Helms

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