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Charcoal Rot of Soybeans


This page was adapted from the article, "Charcoal Rot of Soybeans ," which appeared in Crop & Pest Report on August 25, 2022.

A few years ago, several fields experienced very severe charcoal rot in the Southeast and East central RRV (Figure 1).  While we do not have a good handle on how prevalent the disease is, we are fairly certain it is more common that we think. We encourage you to scout for charcoal rot.

A soybean field with large sections where the foliage has turned various shades of yellow and orange.
Figure 1. Large patches of soybean-infect charcoal rot. Photo in Cass County in 2018.

Infection occurs early in the growing season, but is not often observed until after flowering, and is far more severe and obvious when in a hot and dry growing season.  The disease is caused by a soil-borne pathogen (Macrophomina phaseolina) that infects many crops (corn, sunflower, other legumes, etc..), but we have observed the disease to be most severe in our area on soybeans. 

The disease is typically first noticed when patches of soybeans (often large patches) prematurely wilt and die. The leaves will remain ON the wilted and dying plants (Figure 2).

Soybean plants with wilted leaves many have turned tan or brown.
Figure 2. Wilted soybeans with leaves still attached.

Plant tissue on lower stem and tap root may appear gray or silver and ‘peeling’ away (Figure 3).

Five soybean stems with the outer tissue shave away. The inside of one of the stems is light in color. The other four are gray to black. A silver U.S. quarter is included in the photo for scale.
Figure 3. Lower stem tissue ‘shaved away’, revealing black microcsclerotia.

If you remove the outer tissue (‘shaving’ tissue gently with a pocket knife works very well) you will see profuse charcoal-colored specs called microsclerotia (Figure 4).

A soybean stem with many small black spots just under the outer tissue of the stem.
Figure 4. Lower stem with a dusty gray to silver appearance, with outer tissue peeling away.


Sam Markell
Extension Plant Pathologist, Broad-leaf Crops